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yl Putative vitellogenin receptor yl [ Solenopsis invicta (red fire ant) ]

Gene ID: 105200757, updated on 10-Oct-2024

Summary

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Gene symbol
yl
Gene description
Putative vitellogenin receptor yl
Locus tag
SINV_03683
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
Also known as
VgR; SiVgR
Orthologs
fruit fly honey bee all
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Genomic context

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Location:
chromosome: 2
Exon count:
32
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 2 NC_052665.1 (8088469..8102708)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521529.1 (5346816..5361327)

Chromosome 2 - NC_052665.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase me31b Neighboring gene protein snail Neighboring gene glutathione synthetase Neighboring gene uncharacterized LOC120356917 Neighboring gene Ionotropic receptor 76b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. cDNA cloning and transcriptional regulation of the vitellogenin receptor from the imported fire ant, Solenopsis invicta Buren (Hymenoptera: Formicidae). Chen ME, et al. Insect Mol Biol, 2004 Apr. PMID 15056367
  2. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
  3. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitellogenin receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304596.1 → NP_001291525.1  vitellogenin receptor precursor

    See identical proteins and their annotated locations for NP_001291525.1

    Status: PROVISIONAL

    Source sequence(s)
    AY262832
    UniProtKB/Swiss-Prot
    Q6X0I2
    Conserved Domains (5) summary
    smart00192
    Location:1052 → 1084
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:441 → 483
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:1179 → 1213
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00058
    Location:417 → 457
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:890 → 926
    FXa_inhibition; Coagulation Factor Xa inhibitory site

RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052665.1 Reference UNIL_Sinv_3.0

    Range
    8088469..8102708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6X0I2.1 GenPept UniProtKB/Swiss-Prot:Q6X0I2

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