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Gyg Glycogenin [ Solenopsis invicta (red fire ant) ]

Gene ID: 105200552, updated on 10-Oct-2024

Summary

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Gene symbol
Gyg
Gene description
Glycogenin
Locus tag
SINV_08347
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
Orthologs
fruit fly honey bee all
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Genomic context

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See Gyg in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 6 NC_052669.1 (23879796..23898156, complement)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521562.1 (35723..53967, complement)

Chromosome 6 - NC_052669.1Genomic Context describing neighboring genes Neighboring gene Acyl-CoA dehydrogenase very long chain Neighboring gene leucine carboxyl methyltransferase 1 Neighboring gene uncharacterized LOC120358185 Neighboring gene guanine nucleotide exchange factor DBS Neighboring gene uncharacterized LOC105194548

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fibrous sheath CABYR-binding protein; protein split ends

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052669.1 Reference UNIL_Sinv_3.0

    Range
    23879796..23898156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011168178.3 → XP_011166480.1  protein split ends isoform X1

    Conserved Domains (5) summary
    cd02537
    Location:4 → 254
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:9 → 220
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    pfam05104
    Location:1042 → 1178
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    cl05127
    Location:405 → 536
    DUF4779; Domain of unknown function (DUF4779)
    cl21514
    Location:404 → 453
    TauE; Sulfite exporter TauE/SafE

  2. XM_011168179.3 → XP_011166481.1  fibrous sheath CABYR-binding protein isoform X2

    Conserved Domains (2) summary
    cd02537
    Location:4 → 254
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:9 → 220
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

RNA

  1. XR_850978.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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