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LOC105199868 carbohydrate sulfotransferase 11 [ Solenopsis invicta (red fire ant) ]

Gene ID: 105199868, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105199868
Gene description
carbohydrate sulfotransferase 11
Locus tag
SINV_07120
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
Orthologs
honey bee all
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Genomic context

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See LOC105199868 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 8 NC_052671.1 (5350878..5366494)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020523009.1 (11127..13508)

Chromosome 8 - NC_052671.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase RNF144A Neighboring gene bZIP transcription factor crc Neighboring gene inactive hydroxysteroid dehydrogenase-like protein 1 Neighboring gene uncharacterized LOC120358390 Neighboring gene sodium channel protein Nach Neighboring gene Protein kinase, cAMP-dependent, catalytic subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052671.1 Reference UNIL_Sinv_3.0

    Range
    5350878..5366494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039452519.1 → XP_039308453.1  carbohydrate sulfotransferase 11

    UniProtKB/TrEMBL
    E9IYE2
    Conserved Domains (1) summary
    pfam03567
    Location:93 → 323
    Sulfotransfer_2; Sulfotransferase family

  2. XM_039452518.1 → XP_039308452.1  carbohydrate sulfotransferase 11

    UniProtKB/TrEMBL
    E9IYE2
    Conserved Domains (1) summary
    pfam03567
    Location:93 → 323
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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