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Asph Aspartyl beta-hydroxylase [ Solenopsis invicta (red fire ant) ]

Gene ID: 105197879, updated on 4-May-2024

Summary

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Gene symbol
Asph
Gene description
Aspartyl beta-hydroxylase
Locus tag
SINV_06752
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
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Genomic context

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See Asph in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 12 NC_052675.1 (7251603..7257779)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020522236.1 (24595..31125, complement)

Chromosome 12 - NC_052675.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113005617 Neighboring gene protein hunchback Neighboring gene U2 snRNP-associated SURP motif-containing protein Neighboring gene BLCAP apoptosis inducing factor bc10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamic acid-rich protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052675.1 Reference UNIL_Sinv_3.0

    Range
    7251603..7257779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026141296.2 → XP_025997081.2  glutamic acid-rich protein

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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