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shams glucoside xylosyltransferase 1 shams [ Solenopsis invicta (red fire ant) ]

Gene ID: 105197417, updated on 10-Oct-2024

Summary

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Gene symbol
shams
Gene description
glucoside xylosyltransferase 1 shams
Locus tag
SINV_09024
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
Orthologs
fruit fly honey bee all
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Genomic context

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See shams in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 2 NC_052665.1 (15032966..15035779, complement)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521534.1 (2023069..2025871)

Chromosome 2 - NC_052665.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family G member 5 Neighboring gene Succinyl-CoA:3-ketoacid CoA transferase Neighboring gene PDZ domain-containing protein GIPC-like protein kermit Neighboring gene uncharacterized LOC105197419 Neighboring gene kelch like ECH associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052665.1 Reference UNIL_Sinv_3.0

    Range
    15032966..15035779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011163756.3 → XP_011162058.1  glucoside xylosyltransferase 1

    Conserved Domains (2) summary
    COG1442
    Location:67 → 287
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    cl11394
    Location:66 → 359
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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