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Scgdelta sarcoglycan delta [ Solenopsis invicta (red fire ant) ]

Gene ID: 105195166, updated on 5-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
Locus tag
SINV_13956
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
Orthologs
honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 5 NC_052668.1 (22051353..22258571)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521554.1 (87358..387814, complement)

Chromosome 5 - NC_052668.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113003558 Neighboring gene uncharacterized LOC120357698 Neighboring gene uncharacterized LOC120357700 Neighboring gene uncharacterized LOC120357701 Neighboring gene protein Cep78 homolog Neighboring gene uncharacterized LOC120357699 Neighboring gene phosphodiesterase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052668.1 Reference UNIL_Sinv_3.0

    Range
    22051353..22258571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011160445.3 → XP_011158747.1  zeta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:137 → 412
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_039448922.1 → XP_039304856.1  zeta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:53 → 333
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_039448921.1 → XP_039304855.1  zeta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:53 → 333
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases