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Scgdelta sarcoglycan delta [ Harpegnathos saltator (Jerdon's jumping ant) ]

Gene ID: 105188518, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
Locus tag
EAI_17441
See related
EnsemblRapid:LOC105188518
Gene type
protein coding
RefSeq status
MODEL
Organism
Harpegnathos saltator
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Harpegnathos
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Hsal_v8.5 (GCF_003227715.1) Unplaced Scaffold NW_020229890.1 (1498106..1728888, complement)
101 previous assembly HarSal_1.0 (GCF_000147195.1) Unplaced Scaffold NW_011652910.1 (227617..301853, complement)

NW_020229890.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein of 78 kDa Neighboring gene phosphodiesterase 8 Neighboring gene uncharacterized LOC112589383 Neighboring gene uncharacterized LOC112589572 Neighboring gene Regulator of cullins 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Harpegnathos saltator Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hsal_v8.5

Genomic

  1. NW_020229890.1 Reference Hsal_v8.5

    Range
    1498106..1728888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025303374.1 → XP_025159159.1  zeta-sarcoglycan isoform X1

    Related
    XP_025159159.1, XM_025303374.1
    Conserved Domains (1) summary
    pfam04790
    Location:133 → 406
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_011150032.3 → XP_011148334.2  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    E2C091
    Related
    XP_011148334.2, XM_011150032.3
    Conserved Domains (1) summary
    pfam04790
    Location:54 → 327
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_025303379.1 → XP_025159164.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    E2C091
    Related
    XP_025159164.1, XM_025303379.1
    Conserved Domains (1) summary
    pfam04790
    Location:54 → 327
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

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