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LOC105187020 glutamic acid-rich protein [ Harpegnathos saltator (Jerdon's jumping ant) ]

Gene ID: 105187020, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105187020
Gene description
glutamic acid-rich protein
Locus tag
EAI_10809
See related
EnsemblRapid:LOC105187020
Gene type
protein coding
RefSeq status
MODEL
Organism
Harpegnathos saltator
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Harpegnathos
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Genomic context

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See LOC105187020 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Hsal_v8.5 (GCF_003227715.1) Unplaced Scaffold NW_020229935.1 (386068..395307, complement)
101 previous assembly HarSal_1.0 (GCF_000147195.1) Unplaced Scaffold NW_011652032.1 (868340..877557, complement)

NW_020229935.1Genomic Context describing neighboring genes Neighboring gene toucan Neighboring gene U2 snRNP-associated SURP motif-containing protein Neighboring gene Ras GTPase activating protein 1 Neighboring gene O-glucosyltransferase rumi homolog Neighboring gene Matrix metalloproteinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamic acid-rich protein; protein Ycf2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Harpegnathos saltator Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hsal_v8.5

Genomic

  1. NW_020229935.1 Reference Hsal_v8.5

    Range
    386068..395307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025296689.1 → XP_025152474.1  glutamic acid-rich protein isoform X3

    UniProtKB/TrEMBL
    E2BVM4
    Related
    XP_025152474.1, XM_025296689.1

  2. XM_011147586.3 → XP_011145888.1  protein Ycf2 isoform X2

    UniProtKB/TrEMBL
    E2BVM4
    Related
    XP_011145888.1, XM_011147586.3

  3. XM_025296688.1 → XP_025152473.1  protein Ycf2 isoform X1

    UniProtKB/TrEMBL
    E2BVM4
    Related
    XP_025152473.1, XM_025296688.1

  4. XM_019843133.2 → XP_019698692.1  protein Ycf2 isoform X4

    UniProtKB/TrEMBL
    E2BVM4
    Related
    XP_019698692.1, XM_019843133.2
Nucleotide Protein Strain
Heading Accession and Version

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