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LOC105177593 probable beta-1,4-xylosyltransferase IRX14 [ Sesamum indicum (sesame) ]

Gene ID: 105177593, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105177593
Gene description
probable beta-1,4-xylosyltransferase IRX14
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105177593 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
3
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG15 NC_026159.1 (2678990..2682285, complement)

Linkage Group LG15 - NC_026159.1Genomic Context describing neighboring genes Neighboring gene small RNA degrading nuclease 1 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A Neighboring gene UPF0481 protein At3g47200 Neighboring gene probable WRKY transcription factor 7 Neighboring gene uncharacterized protein At4g06744-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026159.1 Chromosome LG15 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026159.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    2678990..2682285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011100800.2 → XP_011099102.1  probable beta-1,4-xylosyltransferase IRX14

    UniProtKB/TrEMBL
    A0A6I9UVM4
    Conserved Domains (1) summary
    pfam03360
    Location:173 → 416
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein
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