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LOC105176364 mitochondrial carnitine/acylcarnitine carrier-like protein [ Sesamum indicum (sesame) ]

Gene ID: 105176364, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105176364
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105176364 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
5
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG13 NC_026157.1 (3711523..3715859, complement)

Linkage Group LG13 - NC_026157.1Genomic Context describing neighboring genes Neighboring gene THO complex subunit 4D Neighboring gene myosin-binding protein 3 Neighboring gene uncharacterized LOC105176365 Neighboring gene glutathione S-transferase DHAR3, chloroplastic Neighboring gene geranylgeranyl pyrophosphate synthase 7, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026157.1 Chromosome LG13 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026157.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    3711523..3715859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011099144.2 → XP_011097446.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    See identical proteins and their annotated locations for XP_011097446.1

    UniProtKB/TrEMBL
    A0A6I9UG67
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein

  2. XM_011099145.2 → XP_011097447.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    See identical proteins and their annotated locations for XP_011097447.1

    UniProtKB/TrEMBL
    A0A6I9UG67
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein

  3. XM_011099142.2 → XP_011097444.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    See identical proteins and their annotated locations for XP_011097444.1

    UniProtKB/TrEMBL
    A0A6I9UG67
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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