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LOC105176073 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [ Sesamum indicum (sesame) ]

Gene ID: 105176073, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105176073
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105176073 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
6
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG13 NC_026157.1 (1459753..1463865, complement)

Linkage Group LG13 - NC_026157.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase-like Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene histone deacetylase 15 Neighboring gene polygalacturonase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026157.1 Chromosome LG13 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026157.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    1459753..1463865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020698716.1 → XP_020554375.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M8VCW4
    Conserved Domains (1) summary
    cd02537
    Location:290 → 535
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_011098757.2 → XP_011097059.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_011097059.1

    UniProtKB/TrEMBL
    A0A6I9U849
    Conserved Domains (2) summary
    cd02537
    Location:296 → 541
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:371 → 556
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  3. XM_011098756.2 → XP_011097058.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_011097058.1

    UniProtKB/TrEMBL
    A0A6I9U849
    Conserved Domains (2) summary
    cd02537
    Location:296 → 541
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:371 → 556
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  4. XM_011098758.2 → XP_011097060.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_011097060.1

    UniProtKB/TrEMBL
    A0A6I9U849
    Conserved Domains (2) summary
    cd02537
    Location:296 → 541
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:371 → 556
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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