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LOC105175539 callose synthase 11 [ Sesamum indicum (sesame) ]

Gene ID: 105175539, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105175539
Gene description
callose synthase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105175539 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
3
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG12 NC_026156.1 (4255778..4262511)

Linkage Group LG12 - NC_026156.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit RPB2 Neighboring gene probable 2-carboxy-D-arabinitol-1-phosphatase Neighboring gene uncharacterized LOC105175641 Neighboring gene 50S ribosomal protein L21, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026156.1 Chromosome LG12 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026156.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    4255778..4262511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011098003.2 → XP_011096305.1  callose synthase 11

    UniProtKB/TrEMBL
    A0A6I9U6E6
    Conserved Domains (2) summary
    pfam02364
    Location:878 → 1643
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:164 → 276
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_848907.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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