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LOC105174638 probable beta-1,3-galactosyltransferase 8 [ Sesamum indicum (sesame) ]

Gene ID: 105174638, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105174638
Gene description
probable beta-1,3-galactosyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105174638 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
9
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG2 NC_026146.1 (67071..70136, complement)

Linkage Group LG2 - NC_026146.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein CP26, chloroplastic Neighboring gene protein BEARSKIN1 Neighboring gene protein NRT1/ PTR FAMILY 4.4 Neighboring gene GDSL esterase/lipase At1g71250

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026146.1 Chromosome LG2 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026146.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    67071..70136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011096807.2 → XP_011095109.1  probable beta-1,3-galactosyltransferase 8 isoform X2

    UniProtKB/TrEMBL
    A0A6I9UB74
    Conserved Domains (3) summary
    PLN03193
    Location:25 → 409
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:26 → 118
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:154 → 350
    Galactosyl_T; Galactosyltransferase

  2. XM_020692008.1 → XP_020547667.1  probable beta-1,3-galactosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A8M8UMZ3
    Conserved Domains (1) summary
    cl26217
    Location:25 → 410
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
Heading Accession and Version

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