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LOC105173490 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Sesamum indicum (sesame) ]

Gene ID: 105173490, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105173490
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105173490 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
15
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG11 NC_026155.1 (7159003..7166716)

Linkage Group LG11 - NC_026155.1Genomic Context describing neighboring genes Neighboring gene clustered mitochondria protein Neighboring gene chaperone protein dnaJ GFA2, mitochondrial Neighboring gene chaperonin-like RbcX protein 2, chloroplastic Neighboring gene uncharacterized LOC105173488

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026155.1 Chromosome LG11 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026155.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    7159003..7166716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011095245.2 → XP_011093547.2  cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    A0A6I9U0N5
    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1061
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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