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LOC105172719 glycoprotein 3-alpha-L-fucosyltransferase A [ Sesamum indicum (sesame) ]

Gene ID: 105172719, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105172719
Gene description
glycoprotein 3-alpha-L-fucosyltransferase A
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105172719 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
8
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG10 NC_026154.1 (15645272..15650286)

Linkage Group LG10 - NC_026154.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105172717 Neighboring gene uncharacterized LOC105172718 Neighboring gene LAG1 longevity assurance homolog 2 Neighboring gene ethylene-responsive transcription factor ERF109-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026154.1 Chromosome LG10 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein 3-alpha-L-fucosyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026154.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    15645272..15650286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020697509.1 → XP_020553168.1  glycoprotein 3-alpha-L-fucosyltransferase A isoform X2

    UniProtKB/TrEMBL
    A0A6I9TYQ5
    Conserved Domains (1) summary
    pfam00852
    Location:252 → 423
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term

  2. XM_011094269.2 → XP_011092571.1  glycoprotein 3-alpha-L-fucosyltransferase A isoform X1

    UniProtKB/TrEMBL
    A0A6I9TYQ5
    Conserved Domains (1) summary
    pfam00852
    Location:252 → 423
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
Nucleotide Protein
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