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LOC105171862 cellulose synthase-like protein D1 [ Sesamum indicum (sesame) ]

Gene ID: 105171862, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105171862
Gene description
cellulose synthase-like protein D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105171862 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
6
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG10 NC_026154.1 (3762793..3767049, complement)

Linkage Group LG10 - NC_026154.1Genomic Context describing neighboring genes Neighboring gene ribonuclease P protein subunit p25-like protein Neighboring gene vesicle-associated membrane protein 722 Neighboring gene hydroquinone glucosyltransferase-like Neighboring gene uncharacterized LOC105171863

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026154.1 Chromosome LG10 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026154.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    3762793..3767049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011093108.2 → XP_011091410.1  cellulose synthase-like protein D1

    UniProtKB/TrEMBL
    A0A6I9TW66
    Conserved Domains (2) summary
    PLN02248
    Location:1 → 1032
    PLN02248; cellulose synthase-like protein
    cl11394
    Location:503 → 794
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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