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LOC105170785 glucomannan 4-beta-mannosyltransferase 2 [ Sesamum indicum (sesame) ]

Gene ID: 105170785, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105170785
Gene description
glucomannan 4-beta-mannosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105170785 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
9
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG9 NC_026153.1 (6303399..6309310)

Linkage Group LG9 - NC_026153.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 9-like Neighboring gene GABA transporter 1 Neighboring gene glucomannan 4-beta-mannosyltransferase 2 Neighboring gene splicing factor U2af small subunit B-like Neighboring gene transfer RNA leucine (anticodon UAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026153.1 Chromosome LG9 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucomannan 4-beta-mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026153.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    6303399..6309310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011091697.2 → XP_011089999.1  glucomannan 4-beta-mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A6I9U7Y1
    Conserved Domains (2) summary
    cd06437
    Location:97 → 333
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    pfam13641
    Location:97 → 332
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
Heading Accession and Version

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