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LOC105169974 glucomannan 4-beta-mannosyltransferase 2 [ Sesamum indicum (sesame) ]

Gene ID: 105169974, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105169974
Gene description
glucomannan 4-beta-mannosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105169974 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
9
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG9 NC_026153.1 (368278..372417)

Linkage Group LG9 - NC_026153.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C227.17c Neighboring gene AT-hook motif nuclear-localized protein 9-like Neighboring gene glucomannan 4-beta-mannosyltransferase 2 Neighboring gene neuroguidin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026153.1 Chromosome LG9 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucomannan 4-beta-mannosyltransferase 1; glucomannan 4-beta-mannosyltransferase 2; probable mannan synthase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026153.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    368278..372417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011090530.2 → XP_011088832.1  probable mannan synthase 11 isoform X1

    UniProtKB/TrEMBL
    A0A6I9TST2
    Conserved Domains (2) summary
    cd06437
    Location:124 → 360
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    pfam13641
    Location:124 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  2. XM_020696909.1 → XP_020552568.1  glucomannan 4-beta-mannosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M8V0F4
    Conserved Domains (1) summary
    cd06437
    Location:13 → 249
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

  3. XM_020696911.1 → XP_020552570.1  glucomannan 4-beta-mannosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M8V7Y0
    Conserved Domains (1) summary
    cl11394
    Location:11 → 201
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_020696910.1 → XP_020552569.1  glucomannan 4-beta-mannosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M8V7Y0
    Conserved Domains (1) summary
    cl11394
    Location:11 → 201
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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