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LOC105169862 probable galacturonosyltransferase 3 [ Sesamum indicum (sesame) ]

Gene ID: 105169862, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105169862
Gene description
probable galacturonosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105169862 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
9
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG8 NC_026152.1 (21417493..21421686, complement)

Linkage Group LG8 - NC_026152.1Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein 65 kDa protein Neighboring gene putative receptor-like protein kinase At5g39000 Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene uncharacterized LOC105169930

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026152.1 Chromosome LG8 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026152.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    21417493..21421686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011090408.2 → XP_011088710.1  probable galacturonosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I9TXW3
    Conserved Domains (2) summary
    cd06429
    Location:369 → 666
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:49 → 680
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_020696196.1 → XP_020551855.1  probable galacturonosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8M8V610
    Conserved Domains (1) summary
    cl28622
    Location:53 → 681
    PLN02870; Probable galacturonosyltransferase

  3. XM_020696198.1 → XP_020551857.1  probable galacturonosyltransferase 3 isoform X4

    UniProtKB/TrEMBL
    A0A8M8UZP3
    Conserved Domains (1) summary
    cl28622
    Location:9 → 640
    PLN02870; Probable galacturonosyltransferase

  4. XM_020696197.1 → XP_020551856.1  probable galacturonosyltransferase 3 isoform X3

    UniProtKB/TrEMBL
    A0A8M8V6Z5
    Conserved Domains (1) summary
    cl28622
    Location:13 → 641
    PLN02870; Probable galacturonosyltransferase

  5. XM_020696199.1 → XP_020551858.1  probable galacturonosyltransferase 3 isoform X5

    UniProtKB/TrEMBL
    A0A8M8UY81
    Conserved Domains (1) summary
    cl28622
    Location:2 → 613
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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