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LOC105168237 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Sesamum indicum (sesame) ]

Gene ID: 105168237, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105168237
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105168237 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
5
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG8 NC_026152.1 (10876558..10882232, complement)

Linkage Group LG8 - NC_026152.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105168235 Neighboring gene uncharacterized LOC105168236 Neighboring gene potassium transporter 6 Neighboring gene putative potassium transporter 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026152.1 Chromosome LG8 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026152.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    10876558..10882232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011088236.2 → XP_011086538.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    See identical proteins and their annotated locations for XP_011086538.1

    UniProtKB/TrEMBL
    A0A6I9TM08
    Conserved Domains (3) summary
    cd03788
    Location:61 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:2 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 826
    Trehalose_PPase; Trehalose-phosphatase

  2. XM_011088235.2 → XP_011086537.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    See identical proteins and their annotated locations for XP_011086537.1

    UniProtKB/TrEMBL
    A0A6I9TM08
    Conserved Domains (3) summary
    cd03788
    Location:61 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:2 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 826
    Trehalose_PPase; Trehalose-phosphatase

  3. XM_011088233.2 → XP_011086535.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    See identical proteins and their annotated locations for XP_011086535.1

    UniProtKB/TrEMBL
    A0A6I9TM08
    Conserved Domains (3) summary
    cd03788
    Location:61 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:2 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 826
    Trehalose_PPase; Trehalose-phosphatase

  4. XM_011088234.2 → XP_011086536.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    See identical proteins and their annotated locations for XP_011086536.1

    UniProtKB/TrEMBL
    A0A6I9TM08
    Conserved Domains (3) summary
    cd03788
    Location:61 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:2 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 826
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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