U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105168208 hydroxyproline O-galactosyltransferase HPGT3 [ Sesamum indicum (sesame) ]

Gene ID: 105168208, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105168208
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105168208 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG1 NC_026145.1 (125508..130732, complement)

Linkage Group LG1 - NC_026145.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105166530 Neighboring gene glutamic acid-rich protein Neighboring gene uncharacterized LOC110013164 Neighboring gene uncharacterized vacuolar membrane protein YML018C Neighboring gene synaptotagmin-5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_026145.1 Chromosome LG1 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyproline O-galactosyltransferase HPGT3
Names
probable beta-1,3-galactosyltransferase 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026145.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    125508..130732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011089321.2 → XP_011087623.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X2

    UniProtKB/TrEMBL
    A0A6I9TS64
    Conserved Domains (2) summary
    pfam13334
    Location:29 → 107
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:140 → 333
    Galactosyl_T; Galactosyltransferase

  2. XM_011088588.2 → XP_011086890.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X1

    UniProtKB/TrEMBL
    A0A6I9TMS6
    Conserved Domains (2) summary
    pfam13334
    Location:29 → 107
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:140 → 335
    Galactosyl_T; Galactosyltransferase

  3. XM_020697683.1 → XP_020553342.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X3

    UniProtKB/TrEMBL
    A0A8M8V438
    Conserved Domains (1) summary
    cl26217
    Location:8 → 258
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases