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LOC105167526 alpha-1,4-glucan-protein synthase [UDP-forming] 1 [ Sesamum indicum (sesame) ]

Gene ID: 105167526, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105167526
Gene description
alpha-1,4-glucan-protein synthase [UDP-forming] 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105167526 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
4
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG8 NC_026152.1 (3115846..3117493, complement)

Linkage Group LG8 - NC_026152.1Genomic Context describing neighboring genes Neighboring gene probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene COBRA-like protein 4 Neighboring gene protein COBRA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026152.1 Chromosome LG8 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4-glucan-protein synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026152.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    3115846..3117493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011087295.2 → XP_011085597.1  alpha-1,4-glucan-protein synthase [UDP-forming] 1

    UniProtKB/TrEMBL
    A0A6I9TJX0
    Conserved Domains (1) summary
    PLN03180
    Location:1 → 341
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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