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LOC105166319 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Sesamum indicum (sesame) ]

Gene ID: 105166319, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105166319
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105166319 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
3
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG7 NC_026151.1 (4823853..4828197, complement)

Linkage Group LG7 - NC_026151.1Genomic Context describing neighboring genes Neighboring gene photosystem I chlorophyll a/b-binding protein 5, chloroplastic Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene protein TIC 22, chloroplastic Neighboring gene uncharacterized LOC110012308

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026151.1 Chromosome LG7 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026151.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    4823853..4828197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011085626.2 → XP_011083928.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9TG75
    Conserved Domains (2) summary
    cd02537
    Location:293 → 537
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:368 → 503
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  2. XM_020695493.1 → XP_020551152.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M8UXF7
    Conserved Domains (1) summary
    cd02537
    Location:232 → 476
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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