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LOC105166110 polygalacturonate 4-alpha-galacturonosyltransferase [ Sesamum indicum (sesame) ]

Gene ID: 105166110, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105166110
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105166110 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
12
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG7 NC_026151.1 (3550611..3556228)

Linkage Group LG7 - NC_026151.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105166108 Neighboring gene histone deacetylase complex subunit SAP18 Neighboring gene bifunctional nuclease 2 Neighboring gene uncharacterized LOC105166112

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026151.1 Chromosome LG7 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026151.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    3550611..3556228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011085344.2 → XP_011083646.1  polygalacturonate 4-alpha-galacturonosyltransferase

    See identical proteins and their annotated locations for XP_011083646.1

    UniProtKB/TrEMBL
    A0A6I9TKJ8
    Conserved Domains (2) summary
    cd06429
    Location:374 → 672
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:86 → 685
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_011085343.2 → XP_011083645.1  polygalacturonate 4-alpha-galacturonosyltransferase

    See identical proteins and their annotated locations for XP_011083645.1

    UniProtKB/TrEMBL
    A0A6I9TKJ8
    Conserved Domains (2) summary
    cd06429
    Location:374 → 672
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:86 → 685
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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