U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105165533 probable beta-1,4-xylosyltransferase IRX10L [ Sesamum indicum (sesame) ]

Gene ID: 105165533, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105165533
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105165533 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
4
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG1 NC_026145.1 (12927193..12930799, complement)

Linkage Group LG1 - NC_026145.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase assembly factor 2, mitochondrial-like Neighboring gene uncharacterized protein At4g14100-like Neighboring gene random slug protein 5-like Neighboring gene glycine--tRNA ligase, mitochondrial 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_026145.1 Chromosome LG1 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026145.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    12927193..12930799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011084582.2 → XP_011082884.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A6I9TIQ8
    Conserved Domains (1) summary
    pfam03016
    Location:49 → 344
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases