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LOC105164592 cellulose synthase A catalytic subunit 1 [UDP-forming] [ Sesamum indicum (sesame) ]

Gene ID: 105164592, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105164592
Gene description
cellulose synthase A catalytic subunit 1 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105164592 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
14
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG6 NC_026150.1 (16024694..16032602, complement)

Linkage Group LG6 - NC_026150.1Genomic Context describing neighboring genes Neighboring gene adenine nucleotide transporter BT1, chloroplastic/mitochondrial-like Neighboring gene uncharacterized protein At2g34160 Neighboring gene transcription factor HY5 Neighboring gene uncharacterized LOC105164595 Neighboring gene uncharacterized LOC105164594

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026150.1 Chromosome LG6 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026150.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    16024694..16032602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011083276.2 → XP_011081578.1  cellulose synthase A catalytic subunit 1 [UDP-forming]

    UniProtKB/TrEMBL
    A0A6I9TB06
    Conserved Domains (3) summary
    PLN02400
    Location:1 → 1084
    PLN02400; cellulose synthase
    pfam14569
    Location:32 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:514 → 833
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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