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LOC105162341 alpha-1,4-glucan-protein synthase [UDP-forming] 1-like [ Sesamum indicum (sesame) ]

Gene ID: 105162341, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105162341
Gene description
alpha-1,4-glucan-protein synthase [UDP-forming] 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105162341 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
4
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG1 NC_026145.1 (10729391..10731914, complement)

Linkage Group LG1 - NC_026145.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105162332 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene peptidyl-prolyl cis-trans isomerase E-like Neighboring gene dof zinc finger protein DOF5.4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026145.1 Chromosome LG1 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4-glucan-protein synthase [UDP-forming] 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026145.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    10729391..10731914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011080348.2 → XP_011078650.1  alpha-1,4-glucan-protein synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A6I9T4C9
    Conserved Domains (1) summary
    PLN03180
    Location:2 → 346
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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