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LOC105161800 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 [ Sesamum indicum (sesame) ]

Gene ID: 105161800, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105161800
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105161800 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
2
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG5 NC_026149.1 (2468462..2470692)

Linkage Group LG5 - NC_026149.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g06550 Neighboring gene myosin-binding protein 7 Neighboring gene uncharacterized LOC105161704 Neighboring gene transcription factor E2FA Neighboring gene transfer RNA asparagine (anticodon GUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026149.1 Chromosome LG5 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026149.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    2468462..2470692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011079614.2 → XP_011077916.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

    UniProtKB/TrEMBL
    A0A6I9T2Y1
    Conserved Domains (1) summary
    cd02537
    Location:193 → 429
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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