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LOC105161403 probable beta-1,4-xylosyltransferase IRX9 [ Sesamum indicum (sesame) ]

Gene ID: 105161403, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105161403
Gene description
probable beta-1,4-xylosyltransferase IRX9
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105161403 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
3
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG5 NC_026149.1 (480136..481675)

Linkage Group LG5 - NC_026149.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 57 Neighboring gene protein OSB3, chloroplastic/mitochondrial Neighboring gene interactor of constitutive active ROPs 2, chloroplastic Neighboring gene 40S ribosomal protein S23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026149.1 Chromosome LG5 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable beta-1,4-xylosyltransferase IRX9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026149.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    480136..481675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011079071.2 → XP_011077373.2  LOW QUALITY PROTEIN: probable beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A6I9T352
    Conserved Domains (1) summary
    cl11394
    Location:1 → 341
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases