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LOC105160337 soluble starch synthase 1, chloroplastic/amyloplastic [ Sesamum indicum (sesame) ]

Gene ID: 105160337, updated on 18-Sep-2024

Summary

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Gene symbol
LOC105160337
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105160337 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
15
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG4 NC_026148.1 (9042119..9047730, complement)

Linkage Group LG4 - NC_026148.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain, striated muscle Neighboring gene PP2A regulatory subunit TAP46 Neighboring gene protein IQ-DOMAIN 1 Neighboring gene nicotinamide/nicotinic acid mononucleotide adenylyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026148.1 Chromosome LG4 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026148.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    9042119..9047730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011077667.2 → XP_011075969.1  soluble starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A6I9SZT7
    Conserved Domains (2) summary
    cd03791
    Location:138 → 638
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:138 → 635
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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