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LOC105160083 probable xyloglucan 6-xylosyltransferase 5 [ Sesamum indicum (sesame) ]

Gene ID: 105160083, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105160083
Gene description
probable xyloglucan 6-xylosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105160083 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
1
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG4 NC_026148.1 (4437323..4439060)

Linkage Group LG4 - NC_026148.1Genomic Context describing neighboring genes Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene ARF guanine-nucleotide exchange factor GNOM Neighboring gene uncharacterized LOC110011844 Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG13 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026148.1 Chromosome LG4 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5
Names
putative glycosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026148.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    4437323..4439060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011077347.2 → XP_011075649.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A6I9T134
    Conserved Domains (1) summary
    PLN03182
    Location:20 → 434
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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