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LOC105159839 mediator of RNA polymerase II transcription subunit 23 [ Sesamum indicum (sesame) ]

Gene ID: 105159839, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105159839
Gene description
mediator of RNA polymerase II transcription subunit 23
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105159839 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
21
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG1 NC_026145.1 (9126485..9145637)

Linkage Group LG1 - NC_026145.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105159829 Neighboring gene uncharacterized LOC110012151 Neighboring gene probable calcium-binding protein CML25 Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026145.1 Chromosome LG1 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026145.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    9126485..9145637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020696277.1 → XP_020551936.1  mediator of RNA polymerase II transcription subunit 23 isoform X3

    UniProtKB/TrEMBL
    A0A8M8V766
    Conserved Domains (1) summary
    pfam11573
    Location:664 → 1298
    Med23; Mediator complex subunit 23

  2. XM_020696274.1 → XP_020551933.1  mediator of RNA polymerase II transcription subunit 23 isoform X1

    UniProtKB/TrEMBL
    A0A8M8UYE3
    Conserved Domains (1) summary
    pfam11573
    Location:697 → 1331
    Med23; Mediator complex subunit 23

  3. XM_020696276.1 → XP_020551935.1  mediator of RNA polymerase II transcription subunit 23 isoform X2

    UniProtKB/TrEMBL
    A0A8M8V688
    Conserved Domains (1) summary
    pfam11573
    Location:695 → 1329
    Med23; Mediator complex subunit 23
Nucleotide Protein
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