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LOC105158478 hydroxyproline O-galactosyltransferase HPGT1-like [ Sesamum indicum (sesame) ]

Gene ID: 105158478, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105158478
Gene description
hydroxyproline O-galactosyltransferase HPGT1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG1 NC_026145.1 (8242865..8248708)

Linkage Group LG1 - NC_026145.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein POB1-like Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene probable inactive receptor kinase At4g23740

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026145.1 Chromosome LG1 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026145.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    8242865..8248708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011075266.2 → XP_011073568.1  hydroxyproline O-galactosyltransferase HPGT1-like

    UniProtKB/TrEMBL
    A0A6I9SSS3
    Conserved Domains (2) summary
    pfam13334
    Location:19 → 96
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:130 → 324
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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