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LOC105157948 probable xyloglucan 6-xylosyltransferase 5 [ Sesamum indicum (sesame) ]

Gene ID: 105157948, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105157948
Gene description
probable xyloglucan 6-xylosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC105157948 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
3
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (10022055..10025433)

Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like APRR1 Neighboring gene vesicle transport v-SNARE 13 Neighboring gene uncharacterized LOC105157949 Neighboring gene retrovirus-related Pol polyprotein from transposon TNT 1-94

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    10022055..10025433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011074496.2 → XP_011072798.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A6I9STU8
    Conserved Domains (1) summary
    PLN03182
    Location:54 → 466
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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