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LOC105157946 two-component response regulator-like APRR1 [ Sesamum indicum (sesame) ]

Gene ID: 105157946, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105157946
Gene description
two-component response regulator-like APRR1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105157946 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
8
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (9994092..10001168)

Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene transcription factor 25-like Neighboring gene protein NEN1 Neighboring gene vesicle transport v-SNARE 13 Neighboring gene probable xyloglucan 6-xylosyltransferase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator-like APRR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    9994092..10001168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011074492.2 → XP_011072794.1  two-component response regulator-like APRR1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9SRH9
    Conserved Domains (3) summary
    COG0745
    Location:20 → 164
    OmpR; DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription]
    cd00156
    Location:22 → 131
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:462 → 504
    CCT; CCT motif

  2. XM_011074493.2 → XP_011072795.1  two-component response regulator-like APRR1 isoform X2

    See identical proteins and their annotated locations for XP_011072795.1

    UniProtKB/TrEMBL
    A0A6I9SS59
    Conserved Domains (3) summary
    COG0745
    Location:4 → 89
    OmpR; DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription]
    cd00156
    Location:4 → 56
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:387 → 429
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version

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