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LOC105157058 xyloglucan 6-xylosyltransferase 2-like [ Sesamum indicum (sesame) ]

Gene ID: 105157058, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105157058
Gene description
xyloglucan 6-xylosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105157058 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
1
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (751309..753013, complement)

Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ 49-like Neighboring gene ubiquitin-like-specific protease ESD4 Neighboring gene heat shock factor-binding protein 1-like Neighboring gene alanine--tRNA ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    751309..753013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011073355.2 → XP_011071657.2  xyloglucan 6-xylosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A6I9SPP0
    Conserved Domains (1) summary
    PLN03182
    Location:1 → 423
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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Gene LinkOut

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