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LOC105155519 F-box protein GID2 [ Sesamum indicum (sesame) ]

Gene ID: 105155519, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105155519
Gene description
F-box protein GID2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105155519 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
1
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG2 NC_026146.1 (7140809..7142255)

Linkage Group LG2 - NC_026146.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 8.1-like Neighboring gene MFP1 attachment factor 1 Neighboring gene skin secretory protein xP2-like Neighboring gene probable carbohydrate esterase At4g34215

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026146.1 Chromosome LG2 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026146.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    7140809..7142255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011071410.2 → XP_011069712.1  F-box protein GID2

    UniProtKB/TrEMBL
    A0A6I9SJI5
    Conserved Domains (1) summary
    pfam12937
    Location:54 → 94
    F-box-like; F-box-like
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases