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LOC105147713 modifier of mdg4-like [ Acromyrmex echinatior (Panamanian leafcutter ant) ]

Gene ID: 105147713, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105147713
Gene description
modifier of mdg4-like
Locus tag
G5I_07821
See related
EnsemblRapid:LOC105147713
Gene type
protein coding
RefSeq status
MODEL
Organism
Acromyrmex echinatior
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Acromyrmex
Orthologs
honey bee all
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Genomic context

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See LOC105147713 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Aech_3.9 (GCF_000204515.1) Unplaced Scaffold NW_011627173.1 (641998..646286)

NW_011627173.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 1 Neighboring gene protein EFR3 homolog B-like Neighboring gene mahogany Neighboring gene RNA polymerase II subunit RpII215 Neighboring gene DNA polymerase subunit gamma-2, mitochondrial Neighboring gene ER lumen protein-retaining receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011627173.1 Unplaced Scaffold Reference Aech_3.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
modifier of mdg4-like; transcription factor GAGA-like
Names
Broad-complex core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acromyrmex echinatior Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aech_3.9

Genomic

  1. NW_011627173.1 Reference Aech_3.9

    Range
    641998..646286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011058915.1 → XP_011057217.1  modifier of mdg4-like isoform X2

    See identical proteins and their annotated locations for XP_011057217.1

    UniProtKB/TrEMBL
    F4WPV7
    Related
    XP_011057217.1, XM_011058915.1
    Conserved Domains (3) summary
    smart00225
    Location:32 → 116
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:367 → 388
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21 → 116
    BTB; BTB/POZ domain

  2. XM_011058917.1 → XP_011057219.1  transcription factor GAGA-like isoform X4

    Related
    XP_011057219.1, XM_011058917.1
    Conserved Domains (3) summary
    smart00225
    Location:32 → 116
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:347 → 368
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21 → 116
    BTB; BTB/POZ domain

  3. XM_011058914.1 → XP_011057216.1  modifier of mdg4-like isoform X1

    Related
    XP_011057216.1, XM_011058914.1
    Conserved Domains (3) summary
    smart00225
    Location:32 → 116
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:368 → 389
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21 → 116
    BTB; BTB/POZ domain

  4. XM_011058916.1 → XP_011057218.1  transcription factor GAGA-like isoform X3

    Related
    XP_011057218.1, XM_011058916.1
    Conserved Domains (3) summary
    smart00225
    Location:32 → 116
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:348 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21 → 116
    BTB; BTB/POZ domain
Nucleotide Protein
Heading Accession and Version

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