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LOC105129018 F-box protein GID2 [ Populus euphratica (Euphrates poplar) ]

Gene ID: 105129018, updated on 1-Aug-2024

Summary

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Gene symbol
LOC105129018
Gene description
F-box protein GID2
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus euphratica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC105129018 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499846.1 (648910..649769)

NW_011499846.1Genomic Context describing neighboring genes Neighboring gene isoflavone 2'-hydroxylase-like Neighboring gene MFP1 attachment factor 1-like Neighboring gene chromatin modification-related protein EAF3-like Neighboring gene transcription factor MYB44-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011499846.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PopEup_1.0 Primary Assembly

Genomic

  1. NW_011499846.1 Reference PopEup_1.0 Primary Assembly

    Range
    648910..649769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011030912.1 → XP_011029214.1  F-box protein GID2

    UniProtKB/TrEMBL
    A0AAJ6XSH0
    Conserved Domains (1) summary
    pfam00646
    Location:44 → 89
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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