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LOC105111591 uncharacterized protein C18orf8-like [ Populus euphratica (Euphrates poplar) ]

Gene ID: 105111591, updated on 1-Aug-2024

Summary

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Gene symbol
LOC105111591
Gene description
uncharacterized protein C18orf8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus euphratica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC105111591 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011500184.1 (259471..265930, complement)

NW_011500184.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator SUPERMAN-like Neighboring gene kinesin-like protein KIF3A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011500184.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C18orf8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PopEup_1.0 Primary Assembly

Genomic

  1. NW_011500184.1 Reference PopEup_1.0 Primary Assembly

    Range
    259471..265930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011006999.1 → XP_011005301.1  uncharacterized protein C18orf8-like isoform X2

    UniProtKB/TrEMBL
    A0AAJ6T6X5
    Conserved Domains (1) summary
    pfam07035
    Location:527 → 674
    Mic1; Colon cancer-associated protein Mic1-like

  2. XM_011006998.1 → XP_011005300.1  uncharacterized protein C18orf8-like isoform X1

    UniProtKB/TrEMBL
    A0AAJ6T634
    Conserved Domains (1) summary
    pfam07035
    Location:530 → 677
    Mic1; Colon cancer-associated protein Mic1-like

  3. XM_011007000.1 → XP_011005302.1  uncharacterized protein C18orf8-like isoform X3

    UniProtKB/TrEMBL
    A0AAJ6T6T2
    Conserved Domains (1) summary
    pfam07035
    Location:498 → 645
    Mic1; Colon cancer-associated protein Mic1-like

  4. XM_011007001.1 → XP_011005303.1  uncharacterized protein C18orf8-like isoform X4

    UniProtKB/TrEMBL
    A0AAJ6T5Z2
    Conserved Domains (1) summary
    pfam07035
    Location:346 → 493
    Mic1; Colon cancer-associated protein Mic1-like
Nucleotide Protein
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