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SGMS2 sphingomyelin synthase 2 [ Camelus dromedarius (Arabian camel) ]

Gene ID: 105105285, updated on 10-Oct-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Locus tag
Cadr_000001653
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus dromedarius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_04 current mCamDro1.pat (GCF_036321535.1) 1 NC_087436.1 (47239315..47332359, complement)
101 previous assembly CamDro3 (GCF_000803125.2) 2 NC_044512.1 (46062120..46139538, complement)

Chromosome 1 - NC_087436.1Genomic Context describing neighboring genes Neighboring gene capZ-interacting protein-like Neighboring gene cytochrome P450 2U1 Neighboring gene U6 spliceosomal RNA Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
Names
Phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036321535.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCamDro1.pat

Genomic

  1. NC_087436.1 Reference mCamDro1.pat

    Range
    47239315..47332359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064484316.1 → XP_064340386.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A5N4EHU8

  2. XM_031468111.2 → XP_031323971.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_031468124.2 → XP_031323984.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_010999059.3 → XP_010997361.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_010997361.1

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_010999060.3 → XP_010997362.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_010997362.1

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_010999057.3 → XP_010997359.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_010997359.1

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_010999058.3 → XP_010997360.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_010997360.1

    UniProtKB/TrEMBL
    A0A5N4EH95, A0A5N4EHU8
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  8. XM_064484334.1 → XP_064340404.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A5N4EHU8

RNA

  1. XR_010380375.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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