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SPTSSB serine palmitoyltransferase small subunit B [ Camelus dromedarius (Arabian camel) ]

Gene ID: 105085983, updated on 19-Jun-2024

Summary

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Gene symbol
SPTSSB
Gene description
serine palmitoyltransferase small subunit B
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus dromedarius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See SPTSSB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current mCamDro1.pat (GCF_036321535.1) 2 NC_087437.1 (35160382..35187961, complement)
101 previous assembly CamDro3 (GCF_000803125.2) 1 NC_044511.1 (34509065..34536628, complement)

Chromosome 2 - NC_087437.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) Neighboring gene uncharacterized LOC105086019 Neighboring gene NMD3 ribosome export adaptor Neighboring gene otolin 1 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036321535.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCamDro1.pat

Genomic

  1. NC_087437.1 Reference mCamDro1.pat

    Range
    35160382..35187961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010976345.2 → XP_010974647.1  serine palmitoyltransferase small subunit B

    See identical proteins and their annotated locations for XP_010974647.1

    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

  2. XM_010976344.3 → XP_010974646.1  serine palmitoyltransferase small subunit B

    See identical proteins and their annotated locations for XP_010974646.1

    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
Heading Accession and Version

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