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asph aspartate beta-hydroxylase [ Esox lucius (northern pike) ]

Gene ID: 105031615, updated on 18-Jun-2024

Summary

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Gene symbol
asph
Gene description
aspartate beta-hydroxylase
See related
Ensembl:ENSELUG00000024491
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 3 NC_047571.1 (3547251..3591231)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG03 NC_025970.4 (33212568..33253632, complement)

Chromosome 3 - NC_047571.1Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene uncharacterized LOC117593878 Neighboring gene uncharacterized LOC105029209 Neighboring gene tocopherol (alpha) transfer protein Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene RAB2A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047571.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    3547251..3591231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029118429.2 → XP_028974262.2  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A3P8ZBN8
    Conserved Domains (1) summary
    pfam05279
    Location:23 → 128
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_029118431.2 → XP_028974264.2  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 122
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_029118428.2 → XP_028974261.2  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 137
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_029118436.2 → XP_028974269.2  aspartyl/asparaginyl beta-hydroxylase isoform X5

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 141
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_029118451.2 → XP_028974284.2  aspartyl/asparaginyl beta-hydroxylase isoform X9

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 78
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_029118432.2 → XP_028974265.2  aspartyl/asparaginyl beta-hydroxylase isoform X4

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 156
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  7. XM_029118443.2 → XP_028974276.2  aspartyl/asparaginyl beta-hydroxylase isoform X6

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 146
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  8. XM_029118449.2 → XP_028974282.2  aspartyl/asparaginyl beta-hydroxylase isoform X8

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 131
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  9. XM_029118454.2 → XP_028974287.2  aspartyl/asparaginyl beta-hydroxylase isoform X11

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 75
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  10. XM_029118453.2 → XP_028974286.2  aspartyl/asparaginyl beta-hydroxylase isoform X10

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Related
    ENSELUP00000092856.1, ENSELUT00000088999.1
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 118
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_029118448.2 → XP_028974281.2  aspartyl/asparaginyl beta-hydroxylase isoform X7

    UniProtKB/TrEMBL
    A0A6Q2X5I9
    Related
    ENSELUP00000089862.1, ENSELUT00000105328.1
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 133
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
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