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imp3 IMP U3 small nucleolar ribonucleoprotein 3 [ Esox lucius (northern pike) ]

Gene ID: 105030376, updated on 18-Jun-2024

Summary

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Gene symbol
imp3
Gene description
IMP U3 small nucleolar ribonucleoprotein 3
See related
Ensembl:ENSELUG00000028861
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See imp3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 3 NC_047571.1 (28782347..28784489)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG03 NC_025970.4 (8042498..8044730, complement)

Chromosome 3 - NC_047571.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 78 member Ba Neighboring gene solute carrier family 35 member A3b Neighboring gene uncharacterized LOC105030372 Neighboring gene SEC22 homolog B, vesicle trafficking protein a Neighboring gene DUF4612 domain-containing protein Neighboring gene TSEN15 tRNA splicing endonuclease subunit Neighboring gene collagen beta(1-O)galactosyltransferase 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mpp10 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar ribonucleoprotein protein IMP3
Names
IMP3, U3 small nucleolar ribonucleoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047571.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    28782347..28784489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010904210.3 → XP_010902512.1  U3 small nucleolar ribonucleoprotein protein IMP3

    UniProtKB/TrEMBL
    A0A6Q2X4P5
    Related
    ENSELUP00000048250.1, ENSELUT00000051985.2
    Conserved Domains (3) summary
    COG0522
    Location:1 → 167
    RpsD; Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
    pfam00163
    Location:5 → 55
    Ribosomal_S4; Ribosomal protein S4/S9 N-terminal domain
    pfam01479
    Location:108 → 154
    S4; S4 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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