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wt1a WT1 transcription factor a [ Esox lucius (northern pike) ]

Gene ID: 105030317, updated on 12-Sep-2024

Summary

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Gene symbol
wt1a
Gene description
WT1 transcription factor a
See related
Ensembl:ENSELUG00000016479
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See wt1a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 19 NC_047587.1 (7757836..7774311, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG19 NC_025986.4 (7912217..7928840, complement)

Chromosome 19 - NC_047587.1Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 24 Neighboring gene paired box 6a Neighboring gene uncharacterized LOC105030315 Neighboring gene DEP domain-containing protein 7 Neighboring gene t-complex 11, testis-specific-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WT1 transcription factor a
Names
Wilms tumor protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047587.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    7757836..7774311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010904097.3 → XP_010902399.1  WT1 transcription factor a isoform X4

    UniProtKB/TrEMBL
    A0A6Q2XM36
    Conserved Domains (4) summary
    COG5048
    Location:348 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:295 → 314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 288
    WT1; Wilm's tumour protein
    pfam13465
    Location:306 → 333
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010904096.3 → XP_010902398.1  WT1 transcription factor a isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XM36
    Conserved Domains (4) summary
    COG5048
    Location:349 → 407
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:296 → 315
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 289
    WT1; Wilm's tumour protein
    pfam13465
    Location:307 → 334
    zf-H2C2_2; Zinc-finger double domain

  3. XM_010904095.3 → XP_010902397.1  WT1 transcription factor a isoform X2

    UniProtKB/TrEMBL
    A0A6Q2XM36
    Conserved Domains (4) summary
    COG5048
    Location:282 → 408
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:295 → 314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 288
    WT1; Wilm's tumour protein
    pfam13465
    Location:306 → 333
    zf-H2C2_2; Zinc-finger double domain

  4. XM_010904094.3 → XP_010902396.1  WT1 transcription factor a isoform X1

    UniProtKB/TrEMBL
    A0A6Q2XM36
    Related
    ENSELUP00000036996.3, ENSELUT00000039868.3
    Conserved Domains (4) summary
    COG5048
    Location:283 → 409
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:296 → 315
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 289
    WT1; Wilm's tumour protein
    pfam13465
    Location:307 → 334
    zf-H2C2_2; Zinc-finger double domain

  5. XM_010904099.3 → XP_010902401.1  WT1 transcription factor a isoform X6

    UniProtKB/TrEMBL
    A0A6Q2XM36
    Conserved Domains (4) summary
    COG5048
    Location:321 → 379
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 287
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 261
    WT1; Wilm's tumour protein
    pfam13465
    Location:279 → 306
    zf-H2C2_2; Zinc-finger double domain

  6. XM_010904098.3 → XP_010902400.1  WT1 transcription factor a isoform X5

    UniProtKB/TrEMBL
    A0A3P8YJH9, A0A6Q2XM36
    Related
    ENSELUP00000016688.1, ENSELUT00000026130.3
    Conserved Domains (4) summary
    COG5048
    Location:255 → 381
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 287
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:1 → 261
    WT1; Wilm's tumour protein
    pfam13465
    Location:279 → 306
    zf-H2C2_2; Zinc-finger double domain

  7. XM_029115272.2 → XP_028971105.1  WT1 transcription factor a isoform X7

    UniProtKB/TrEMBL
    A0A6Q2XWJ0
    Related
    ENSELUP00000057958.2, ENSELUT00000050069.2
    Conserved Domains (3) summary
    COG5048
    Location:179 → 305
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:192 → 211
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02165
    Location:14 → 185
    WT1; Wilm's tumor protein
Nucleotide Protein
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