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LOC105030224 elongation factor 2 [ Esox lucius (northern pike) ]

Gene ID: 105030224, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105030224
Gene description
elongation factor 2
See related
Ensembl:ENSELUG00000013203
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105030224 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 13 NC_047581.1 (38095681..38108549, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG13 NC_025980.4 (1733181..1747302)

Chromosome 13 - NC_047581.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene CCR4-NOT transcription complex, subunit 6-like Neighboring gene C-X-C motif chemokine 13 Neighboring gene protein inhibitor of activated STAT, 2 Neighboring gene cilia and flagella associated protein 299 Neighboring gene uncharacterized LOC109616525 Neighboring gene bone morphogenetic protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047581.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    38095681..38108549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013136985.4 → XP_012992439.1  elongation factor 2

    UniProtKB/TrEMBL
    A0A3P8Y8R3, A0A6Q2YZN3
    Related
    ENSELUP00000012999.1, ENSELUT00000021423.3
    Conserved Domains (6) summary
    cd01885
    Location:20 → 233
    EF2; Elongation Factor 2 (EF2) in archaea and eukarya
    cd01681
    Location:576 → 747
    aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
    cd04096
    Location:744 → 823
    eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
    PTZ00416
    Location:1 → 860
    PTZ00416; elongation factor 2; Provisional
    cd03700
    Location:396 → 490
    EF2_snRNP_like_II; Domain II of elongation factor 2 and C-terminal domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein
    cd16261
    Location:505 → 576
    EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)
Nucleotide Protein
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