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dis3l2 DIS3 like 3'-5' exoribonuclease 2 [ Esox lucius (northern pike) ]

Gene ID: 105028788, updated on 18-Jun-2024

Summary

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Gene symbol
dis3l2
Gene description
DIS3 like 3'-5' exoribonuclease 2
See related
Ensembl:ENSELUG00000022719
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See dis3l2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 3 NC_047571.1 (28633726..28647959, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG03 NC_025970.4 (8184079..8198237)

Chromosome 3 - NC_047571.1Genomic Context describing neighboring genes Neighboring gene angiomotin-like 2a Neighboring gene myosin VIIBb Neighboring gene nucleolin Neighboring gene probable cation-transporting ATPase 13A3 Neighboring gene transcription factor HES-1-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DIS3-like exonuclease 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047571.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    28633726..28647959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013132412.3 → XP_012987866.2  DIS3-like exonuclease 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P8Z6R1
    Related
    ENSELUP00000023908.2, ENSELUT00000042895.3
    Conserved Domains (3) summary
    COG0557
    Location:283 → 969
    VacB; Exoribonuclease R [Transcription]
    pfam17216
    Location:272 → 418
    Rrp44_CSD1; Rrp44-like cold shock domain
    pfam17877
    Location:940 → 1030
    Dis3l2_C_term; DIS3-like exonuclease 2 C terminal

  2. XM_020045359.3 → XP_019900918.2  DIS3-like exonuclease 2 isoform X2

    UniProtKB/TrEMBL
    A0A3P8Z6R1
    Conserved Domains (2) summary
    COG0557
    Location:283 → 849
    VacB; Exoribonuclease R [Transcription]
    pfam17216
    Location:272 → 418
    Rrp44_CSD1; Rrp44-like cold shock domain
Nucleotide Protein
Heading Accession and Version

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