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LOC105027630 ras-related protein Rab-5C-like [ Esox lucius (northern pike) ]

Gene ID: 105027630, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105027630
Gene description
ras-related protein Rab-5C-like
See related
Ensembl:ENSELUG00000010439
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105027630 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 5 NC_047573.1 (29087167..29097245)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG05 NC_025972.4 (29164155..29174545)

Chromosome 5 - NC_047573.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein Xfin-like Neighboring gene zinc finger protein 845-like Neighboring gene zinc finger protein 385D Neighboring gene tripartite motif-containing protein 16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-5C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047573.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    29087167..29097245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010899796.5 → XP_010898098.1  ras-related protein Rab-5C-like

    See identical proteins and their annotated locations for XP_010898098.1

    UniProtKB/TrEMBL
    A0A3P8Y2P6, A0A6Q2YF11
    Related
    ENSELUP00000009924.1, ENSELUT00000003002.3
    Conserved Domains (1) summary
    cd01860
    Location:21 → 183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

  2. XM_013131951.4 → XP_012987405.1  ras-related protein Rab-5C-like

    See identical proteins and their annotated locations for XP_012987405.1

    UniProtKB/TrEMBL
    A0A3P8Y2P6, A0A6Q2YF11
    Conserved Domains (1) summary
    cd01860
    Location:21 → 183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

  3. XM_010899798.4 → XP_010898100.1  ras-related protein Rab-5C-like

    See identical proteins and their annotated locations for XP_010898100.1

    UniProtKB/TrEMBL
    A0A3P8Y2P6, A0A6Q2YF11
    Conserved Domains (1) summary
    cd01860
    Location:21 → 183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
Nucleotide Protein
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