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rraga Ras-related GTP binding A [ Esox lucius (northern pike) ]

Gene ID: 105026972, updated on 18-Jun-2024

Summary

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Gene symbol
rraga
Gene description
Ras-related GTP binding A
See related
Ensembl:ENSELUG00000009655
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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See rraga in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 7 NC_047575.1 (19242360..19246571)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG07 NC_025974.4 (31744809..31749176, complement)

Chromosome 7 - NC_047575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105026969 Neighboring gene chromatin modifying protein 1B Neighboring gene nucleoporin 62 like Neighboring gene cyclic nucleotide gated channel subunit alpha 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Gtr1-Gtr2 GTPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related GTP-binding protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047575.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    19242360..19246571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010898821.5 → XP_010897123.1  ras-related GTP-binding protein A

    See identical proteins and their annotated locations for XP_010897123.1

    UniProtKB/TrEMBL
    A0A3P8ZTN9
    Conserved Domains (1) summary
    cd11384
    Location:9 → 292
    RagA_like; Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

  2. XM_010898822.4 → XP_010897124.1  ras-related GTP-binding protein A

    See identical proteins and their annotated locations for XP_010897124.1

    UniProtKB/TrEMBL
    A0A3P8ZTN9
    Conserved Domains (1) summary
    cd11384
    Location:9 → 292
    RagA_like; Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

  3. XM_010898824.5 → XP_010897126.1  ras-related GTP-binding protein A

    See identical proteins and their annotated locations for XP_010897126.1

    UniProtKB/TrEMBL
    A0A3P8ZTN9
    Related
    ENSELUP00000031971.2, ENSELUT00000004501.3
    Conserved Domains (1) summary
    cd11384
    Location:9 → 292
    RagA_like; Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B
Nucleotide Protein
Heading Accession and Version

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