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LOC105026020 septin-8-A [ Esox lucius (northern pike) ]

Gene ID: 105026020, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105026020
Gene description
septin-8-A
See related
Ensembl:ENSELUG00000023338
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
sept8
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Genomic context

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See LOC105026020 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 4 NC_047572.1 (12830839..12844514, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG04 NC_025971.4 (22015077..22032679)

Chromosome 4 - NC_047572.1Genomic Context describing neighboring genes Neighboring gene NudC domain containing 2 Neighboring gene cyclin G1 Neighboring gene growth differentiation factor 9 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit VII

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-8-A
Names
septin 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047572.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    12830839..12844514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013133506.4 → XP_012988960.1  septin-8-A isoform X1

    UniProtKB/TrEMBL
    A0A3P8Z760, A0A6Q2YSW8
    Related
    ENSELUP00000053371.2, ENSELUT00000060306.2
    Conserved Domains (4) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:22 → 405
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cl00130
    Location:300 → 434
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
    cl20817
    Location:350 → 405
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_020046080.3 → XP_019901639.1  septin-8-A isoform X2

    UniProtKB/TrEMBL
    A0A3P8Z760
    Related
    ENSELUP00000024560.3, ENSELUT00000036039.3
    Conserved Domains (2) summary
    cd01850
    Location:34 → 302
    CDC_Septin; CDC/Septin GTPase family
    cl26511
    Location:268 → 421
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version

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